miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|27811034|gb|CB065456.1|CB065456 ACAAACCACTAAATATCCGGAGGGGACTAAAATTGCTTTAATCAGTCAGCCTAAACAAAGTACAAACAGCTTAATAAATA
AGAAAAAATTAAATAAAACTGAACCTAAAATGCACCTACAGAGTCCATACATAGTCTGGTGCATCCTCCCTTTTCCCAGC
CACTGTACGATACAAATACATCTTCTCGACTCTCTGCCCATCTTCCACGTAACAATCTGCCTGTTCACTTTCACTGAAAA
TCTCCACATTCAACCTCGGCATCTTCTTTGCCAGTGTCTTGCATGCTTCTACAGTCACCTCGCACGACGACATCCAAAGG
GATCGCATTGTTTCATACTTCCCTATGTCTGTTAGAAGCGCCGTGTCTCCGAAAGGACAGTCTCTAATCTCAAGCTTGCG
AATCTTTTTGCATCCGTTCAATACATAGAGCATTCCCTTGTCACTCTCGCCAGCAAATGCAATAGATAACATTTCAAGCT
GCTCAGCATACATACCAATGTAAAGGAAAACCTGGTCGGTCAACTGACCTGAGAGTGATAGCCGCCTCAGTCGCTTGCAT
GACTGCACAATCGCCCCAAAACCTTCATCTAGTGGCTGCATTGTGTCAGGGTCAGGTTTTGTTGCATCCAGGATGCATAA
CCTAAATCGGATAAAATTTGGGCAGTTTTTGGCCACTGCTATGAGAGCAGCATTGGTCATCTGGTGACAGAAGTAGAGTA
ATGAGTGAAGCTTAAGACATCCCATTGATATCGCTACAAGTCCTTTTTTCGGT




Most similar to sp|Q9LW29|AFB2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LW29|AFB2_ARATH Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis
            thaliana GN=AFB2 PE=1 SV=1
          Length = 575

 Score =  327 bits (838), Expect = 6e-89
 Identities = 162/220 (73%), Positives = 184/220 (83%), Gaps = 3/220 (1%)
 Frame = -2

Query: 769  KKGLVAISMGCLKLHSLLYFCHQMTNAALIAVAKNCPNFIRFRLCILDATKPDPDTMQPL 590
            ++GLVAIS GC KLHS+LYFC QMTNAAL+ VAKNCPNFIRFRLCIL+  KPD  T QPL
Sbjct: 356  EEGLVAISAGCPKLHSILYFCQQMTNAALVTVAKNCPNFIRFRLCILEPNKPDHVTSQPL 415

Query: 589  DEGFGAIVQSCKRLRRLSLSGQLTDQVFLYIGMYAEQLEMLSIAFAGESDKGMLYVLNGC 410
            DEGFGAIV++CK LRRLSLSG LTDQVFLYIGMYA QLEMLSIAFAG++DKGMLYVLNGC
Sbjct: 416  DEGFGAIVKACKSLRRLSLSGLLTDQVFLYIGMYANQLEMLSIAFAGDTDKGMLYVLNGC 475

Query: 409  KKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSCEVTVEACKTLAKKMPRLNVEIFSE 230
            KK++KLEIRD PFGDTALL D+ KYETMRSLWMSSCEVT+  CK LA+K P LNVEI +E
Sbjct: 476  KKMKKLEIRDSPFGDTALLADVSKYETMRSLWMSSCEVTLSGCKRLAEKAPWLNVEIINE 535

Query: 229  SE---QADCYVEDGQRVEKMYLYRTVAGKREDAPDYVWTL 119
            ++     +   E  Q+V+K+YLYRTV G R DAP +VW L
Sbjct: 536  NDNNRMEENGHEGRQKVDKLYLYRTVVGTRMDAPPFVWIL 575